<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="4.4.1">Jekyll</generator><link href="https://inkandvijay.com/feed.xml" rel="self" type="application/atom+xml" /><link href="https://inkandvijay.com/" rel="alternate" type="text/html" /><updated>2026-05-10T14:04:54-05:00</updated><id>https://inkandvijay.com/feed.xml</id><title type="html">Vijay Dubey</title><subtitle>Project portfolio.</subtitle><author><name>Vijay Dubey</name></author><entry><title type="html">Graph neural network surrogates for contacting deformable bodies with necessary and sufficient contact detection</title><link href="https://inkandvijay.com/publications/publications-cmame-gnn-contact/" rel="alternate" type="text/html" title="Graph neural network surrogates for contacting deformable bodies with necessary and sufficient contact detection" /><published>2025-09-15T12:00:00-05:00</published><updated>2025-09-15T12:00:00-05:00</updated><id>https://inkandvijay.com/publications/publications-cmame-gnn-contact</id><content type="html" xml:base="https://inkandvijay.com/publications/publications-cmame-gnn-contact/"><![CDATA[<p><span class="__dimensions_badge_embed__" data-doi="10.1016/j.cma.2025.118413" data-style="small_rectangle"></span><script async="" src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></p>

<p><strong>DOI:</strong> <a href="https://doi.org/10.1016/j.cma.2025.118413">10.1016/j.cma.2025.118413</a></p>

<p><strong>Authors:</strong> Vijay Dubey, <a href="https://scholar.google.com/citations?user=48zQVCAAAAAJ&amp;hl=en&amp;oi=ao">Collin E. Haese</a>, <a href="https://scholar.google.com/citations?user=pkCB920AAAAJ&amp;hl=en">Osman Gültekin</a>, David Dalton, <a href="https://scholar.google.com/citations?user=RHSOSbEAAAAJ&amp;hl=en">Manuel K. Rausch</a>, <a href="https://scholar.google.com/citations?user=l2mDGNcAAAAJ&amp;hl=en">Jan Fuhg</a></p>

<p><strong>Abstract:</strong> Surrogate models for the rapid inference of nonlinear boundary value problems in mechanics are helpful in a broad range of engineering applications. However, effective surrogate modeling of applications involving the contact of deformable bodies, especially in the context of varying geometries, is still an open issue. In particular, existing methods are confined to rigid body contact or, at best, contact between rigid and soft objects with well-defined contact planes. Furthermore, they employ contact or collision detection filters that serve as a rapid test but use only the necessary and not sufficient conditions for detection. In this work, we present a graph neural network architecture that utilizes continuous collision detection and, for the first time, incorporates sufficient conditions designed for contact between soft deformable bodies. We test its performance on two benchmarks, including a problem in soft tissue mechanics of predicting the closed state of a bioprosthetic aortic valve. We find a regularizing effect on adding additional contact terms to the loss function, leading to better generalization of the network. These benefits hold for simple contact at similar planes and element normal angles, and complex contact at differing planes and element normal angles. We also demonstrate that the framework can handle varying reference geometries. However, such benefits come with high computational costs during training, resulting in a trade-off that may not always be favorable. We quantify the training cost and the resulting inference speedups on various hardware architectures. Importantly, our graph neural network implementation results in up to a hundred- to thousand-fold speedup on GPU, and twenty- to two hundred-fold speedup on CPU for our benchmark problems at inference.</p>

<p><strong>Keywords:</strong> Graph neural network; Contact mechanics; Soft tissue mechanics; Surrogate model; Computational mechanics</p>

<h1 id="how-to-cite">How to Cite</h1>

<div class="language-bib highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="nc">@article</span><span class="p">{</span><span class="nl">dubey_graph_2026</span><span class="p">,</span>
  <span class="na">title</span> <span class="p">=</span> <span class="s">{Graph neural network surrogates for contacting deformable bodies with necessary and sufficient contact detection}</span><span class="p">,</span>
  <span class="na">volume</span> <span class="p">=</span> <span class="s">{448}</span><span class="p">,</span>
  <span class="na">issn</span> <span class="p">=</span> <span class="s">{0045-7825}</span><span class="p">,</span>
  <span class="na">url</span> <span class="p">=</span> <span class="s">{https://doi.org/10.1016/j.cma.2025.118413}</span><span class="p">,</span>
  <span class="na">doi</span> <span class="p">=</span> <span class="s">{10.1016/j.cma.2025.118413}</span><span class="p">,</span>
  <span class="na">urldate</span> <span class="p">=</span> <span class="s">{2025-09-26}</span><span class="p">,</span>
  <span class="na">journal</span> <span class="p">=</span> <span class="s">{Computer Methods in Applied Mechanics and Engineering}</span><span class="p">,</span>
  <span class="na">author</span> <span class="p">=</span> <span class="s">{Dubey, Vijay K. and Haese, Collin E. and Gültekin, Osman and Dalton, David and Rausch, Manuel K. and Fuhg, Jan}</span><span class="p">,</span>
  <span class="na">month</span> <span class="p">=</span> <span class="nv">jan</span><span class="p">,</span>
  <span class="na">year</span> <span class="p">=</span> <span class="s">{2026}</span><span class="p">,</span>
  <span class="na">keywords</span> <span class="p">=</span> <span class="s">{Contact mechanics, Computational mechanics, Graph neural network, Soft tissue mechanics, Surrogate model}</span><span class="p">,</span>
  <span class="na">pages</span> <span class="p">=</span> <span class="s">{118413}</span><span class="p">,</span>
<span class="p">}</span>
</code></pre></div></div>]]></content><author><name>Vijay Dubey</name></author><category term="publications" /><category term="Journal" /><category term="CMAME" /><category term="FirstAuthor" /><summary type="html"><![CDATA[]]></summary></entry><entry><title type="html">Publications Cmame Gnn Contact.md:zone</title><link href="https://inkandvijay.com/publications-cmame-gnn-contact.md-Zone/" rel="alternate" type="text/html" title="Publications Cmame Gnn Contact.md:zone" /><published>2025-09-15T00:00:00-05:00</published><updated>2025-09-15T00:00:00-05:00</updated><id>https://inkandvijay.com/publications-cmame-gnn-contact.md:Zone</id><content type="html" xml:base="https://inkandvijay.com/publications-cmame-gnn-contact.md-Zone/"><![CDATA[[ZoneTransfer]
ZoneId=3]]></content><author><name>Vijay Dubey</name></author><summary type="html"><![CDATA[[ZoneTransfer] ZoneId=3]]></summary></entry><entry><title type="html">Projects Gnn Contact.md:zone</title><link href="https://inkandvijay.com/projects-gnn-contact.md-Zone/" rel="alternate" type="text/html" title="Projects Gnn Contact.md:zone" /><published>2025-08-01T00:00:00-05:00</published><updated>2025-08-01T00:00:00-05:00</updated><id>https://inkandvijay.com/projects-gnn-contact.md:Zone</id><content type="html" xml:base="https://inkandvijay.com/projects-gnn-contact.md-Zone/"><![CDATA[[ZoneTransfer]
ZoneId=3]]></content><author><name>Vijay Dubey</name></author><summary type="html"><![CDATA[[ZoneTransfer] ZoneId=3]]></summary></entry><entry><title type="html">Projects Nisar.md:zone</title><link href="https://inkandvijay.com/projects-NISAR.md-Zone/" rel="alternate" type="text/html" title="Projects Nisar.md:zone" /><published>2025-07-30T00:00:00-05:00</published><updated>2025-07-30T00:00:00-05:00</updated><id>https://inkandvijay.com/projects-NISAR.md:Zone</id><content type="html" xml:base="https://inkandvijay.com/projects-NISAR.md-Zone/"><![CDATA[[ZoneTransfer]
ZoneId=3]]></content><author><name>Vijay Dubey</name></author><summary type="html"><![CDATA[[ZoneTransfer] ZoneId=3]]></summary></entry><entry><title type="html">Graph Neural Network Surrogates for Contact Mechanics</title><link href="https://inkandvijay.com/projects/projects-gnn-contact/" rel="alternate" type="text/html" title="Graph Neural Network Surrogates for Contact Mechanics" /><published>2025-07-21T12:00:00-05:00</published><updated>2025-07-21T12:00:00-05:00</updated><id>https://inkandvijay.com/projects/projects-gnn-contact</id><content type="html" xml:base="https://inkandvijay.com/projects/projects-gnn-contact/"><![CDATA[<h2 id="question">Question</h2>

<p>Can a graph neural network be used as a surrogate for nonlinear mechanics, especially in the presence of contact?</p>

<h2 id="summary">Summary</h2>

<p>Surrogate models, including those based on machine learning, struggle with contact modeling. A common simplification assumes rigid body contact, thereby excluding soft material interactions. Prior works often rely on fast but insufficient necessary conditions, which can miss some contact pairs.</p>

<p>In our study, we present a graph neural network that utilizes continuous collision detection and, for the first time, incorporates sufficient conditions for contact detection within this framework. The robust contact detection computes a penalty that is minimized during the training.</p>

<figure>
  
<img src="/assets/images/00010_GNN_Contact_LinkedIn.gif" alt="Overall figure." />

  <figcaption>Schematic of the architecture and the overall workflow.</figcaption>
</figure>

<h2 id="what-are-our-findings">What are our findings?</h2>

<ul>
  <li>Including contact loss regularizes training and improves generalization of contact behavior.</li>
  <li>Applies to complex contact: i.e., contact planes aren’t fixed, element normal angles are non-uniform, and reference configuration varies.</li>
  <li>Incurs significant computational cost at training time (10x) but leads to rapid inferences (1000x).</li>
</ul>

<h2 id="how-to-cite">How to Cite</h2>

<p>For more details read our paper:</p>

<p><a href="https://doi.org/10.1016/j.cma.2025.118413">Dubey VK, Haese CE, Gültekin O, Dalton D, Rausch MK, Fuhg J. Graph neural network surrogates for contacting deformable bodies with necessary and sufficient contact detection. Computer Methods in Applied Mechanics and Engineering. 2026;448:118413.</a></p>

<p>Access to complete code on Soft Tissue Biomechanics Lab github <a href="https://github.com/SoftTissueBiomechanicsLab/GraphNeuralNetwork_SoftBodyContact">here</a>.</p>

<p>Access to all the dataset used in the work on the Soft Tissue Biomechancs Lab’s Texas DataVerse <a href="https://doi.org/10.18738/T8/HTGUP6">here</a>.</p>

<p>Earlier arxiv <a href="https://doi.org/10.48550/arXiv.2507.13459">preprint</a>.</p>

<p>Citation details:</p>

<div class="language-bib highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="nc">@article</span><span class="p">{</span><span class="nl">dubey_graph_2026</span><span class="p">,</span>
  <span class="na">title</span> <span class="p">=</span> <span class="s">{Graph neural network surrogates for contacting deformable bodies with necessary and sufficient contact detection}</span><span class="p">,</span>
  <span class="na">volume</span> <span class="p">=</span> <span class="s">{448}</span><span class="p">,</span>
  <span class="na">issn</span> <span class="p">=</span> <span class="s">{0045-7825}</span><span class="p">,</span>
  <span class="na">url</span> <span class="p">=</span> <span class="s">{https://doi.org/10.1016/j.cma.2025.118413}</span><span class="p">,</span>
  <span class="na">doi</span> <span class="p">=</span> <span class="s">{10.1016/j.cma.2025.118413}</span><span class="p">,</span>
  <span class="na">urldate</span> <span class="p">=</span> <span class="s">{2025-09-26}</span><span class="p">,</span>
  <span class="na">journal</span> <span class="p">=</span> <span class="s">{Computer Methods in Applied Mechanics and Engineering}</span><span class="p">,</span>
  <span class="na">author</span> <span class="p">=</span> <span class="s">{Dubey, Vijay K. and Haese, Collin E. and Gültekin, Osman and Dalton, David and Rausch, Manuel K. and Fuhg, Jan}</span><span class="p">,</span>
  <span class="na">month</span> <span class="p">=</span> <span class="nv">jan</span><span class="p">,</span>
  <span class="na">year</span> <span class="p">=</span> <span class="s">{2026}</span><span class="p">,</span>
  <span class="na">keywords</span> <span class="p">=</span> <span class="s">{Contact mechanics, Computational mechanics, Graph neural network, Soft tissue mechanics, Surrogate model}</span><span class="p">,</span>
  <span class="na">pages</span> <span class="p">=</span> <span class="s">{118413}</span><span class="p">,</span>
<span class="p">}</span>
</code></pre></div></div>

<h2 id="linkedin-announcement">LinkedIn Announcement</h2>

<iframe src="https://www.linkedin.com/embed/feed/update/urn:li:share:7354581728562212865?collapsed=1" height="555" width="100%" frameborder="0" allowfullscreen="" title="Embedded post"></iframe>]]></content><author><name>Vijay Dubey</name></author><category term="projects" /><summary type="html"><![CDATA[Question]]></summary></entry><entry><title type="html">NASA-ISRO Synthetic Aperature Radar to be Launched Soon</title><link href="https://inkandvijay.com/projects/projects-NISAR/" rel="alternate" type="text/html" title="NASA-ISRO Synthetic Aperature Radar to be Launched Soon" /><published>2025-07-20T13:00:00-05:00</published><updated>2025-07-20T13:00:00-05:00</updated><id>https://inkandvijay.com/projects/projects-NISAR</id><content type="html" xml:base="https://inkandvijay.com/projects/projects-NISAR/"><![CDATA[<h2 id="mission-overview">Mission Overview</h2>

<!-- Courtesy of embedresponsively.com -->

<div class="responsive-video-container">
    <iframe src="https://www.youtube-nocookie.com/embed/2AFEbG16mY4?si=UWhg6J3qvmqpTN94" frameborder="0" webkitallowfullscreen="" mozallowfullscreen="" allowfullscreen=""></iframe>
  </div>

<h2 id="eli5">ELI5</h2>

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overflow:hidden; padding:8px 0 7px; text-align:center; text-overflow:ellipsis; white-space:nowrap;"><a href="https://www.instagram.com/reel/DMi6jdQTvYn/?utm_source=ig_embed&amp;utm_campaign=loading" style=" color:#c9c8cd; font-family:Arial,sans-serif; font-size:14px; font-style:normal; font-weight:normal; line-height:17px; text-decoration:none;" target="_blank">A post shared by Los Angeles Public Library (@lapubliclibrary)</a></p></div></blockquote>
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<h2 id="launch-window">Launch Window</h2>

<p>Possibly between 16 July to 14 August 2025 and 1130-1530 (UTC) as per <a href="https://www.reddit.com/r/ISRO/comments/1lf7p5n/new_notam_for_gslvf16_nisar_launch_is_out/">NOTAM</a>.</p>

<div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>A1877/25 (Issued for VOMF PART 1 OF 2) - GSLV-F16 ROCKET LAUNCH FM SHAR RANGE, SRIHARIKOTA WILL TAKE 
PLACE AS PER FLW DETAILS.THE LAUNCH WILL BE ON ANY ONE
OF THE DAY DRG THIS PERIOD.ACTUAL DATE OF LAUNCH WILL BE
INTIMATED ATLEAST 24 HR IN ADVANCE THROUGH A SEPARATE NOTAM.
LAUNCH PAD COORD: 134312N0801348E
NO FLT IS PERMITTED OVER THE DNG ZONES.
A)DANGER ZONE -1:IS A CIRCLE OF 10 NAUTICAL MILES AROUND THE 
LAUNCHER.
B)DANGER ZONE -2:IS AN AREA BOUNDED BY FOLLOWING COORD:
I.103000N 0824500E
II.105000N 0830500E
III.085533N 0844109E
IV.091743N 0834543E
V.103000N 0824500E
RTE AFFECTED IN CHENNAI FIR:
W20, L896, N563, N564, Q11, Q23, Q24, V4, V9, T3
CLOSURES/ALTN RTE FOR OVERFLYING:
1. W20 NOT AVBL BTN MMV-KAMGU
   ALTN: MMV-DCT-DOHIA-DCT-RAMDO-DCT-KAMGU
2. Q24 NOT AVBL BTN MMV-KAMGU
   ALTN: MMV-DCT-DOHIA-DCT-RAMDO-DCT-KAMGU (UNI DIRECTIONAL)
PART 1 OF 2. 1130-1530, 16 JUL 11:30 2025 UNTIL 14 AUG 15:30 2025. CREATED:
19 JUN 10:22 2025
</code></pre></div></div>

<h2 id="more-details">More Details</h2>

<p><a href="https://nisar.jpl.nasa.gov/">NISAR</a></p>]]></content><author><name>Vijay Dubey</name></author><category term="projects" /><summary type="html"><![CDATA[Mission Overview]]></summary></entry><entry><title type="html">Playground Food.md:zone</title><link href="https://inkandvijay.com/playground-food.md-Zone/" rel="alternate" type="text/html" title="Playground Food.md:zone" /><published>2025-07-19T00:00:00-05:00</published><updated>2025-07-19T00:00:00-05:00</updated><id>https://inkandvijay.com/playground-food.md:Zone</id><content type="html" xml:base="https://inkandvijay.com/playground-food.md-Zone/"><![CDATA[[ZoneTransfer]
ZoneId=3]]></content><author><name>Vijay Dubey</name></author><summary type="html"><![CDATA[[ZoneTransfer] ZoneId=3]]></summary></entry><entry><title type="html">Fooood</title><link href="https://inkandvijay.com/playground/playground-food/" rel="alternate" type="text/html" title="Fooood" /><published>2025-07-18T13:00:00-05:00</published><updated>2025-07-18T13:00:00-05:00</updated><id>https://inkandvijay.com/playground/playground-food</id><content type="html" xml:base="https://inkandvijay.com/playground/playground-food/"><![CDATA[<p>The weekdays are about cooking healthy but quick recipes. On weekends, I choose recipes that take longer time to cook. Either ways, I wanted to scrapbook some of the stuff I was too happy to make and eat, but this is digital world so I decided to make a blog post instead. Here are some things whether or not they look photogenic. Proceed with caution, especially if you are hungry.</p>

<figure>
  
<img src="/assets/images/FoodByMe/aa_halwa_paneer_biriyani.jpg" alt="aa" />

  <figcaption>Gajar ka Halwa, Paneer Curry, and Egg Pulao.</figcaption>
</figure>

<figure>
  
<img src="/assets/images/FoodByMe/ad_milkshake_prep_1.jpeg" alt="ad" />

  <figcaption>Preparation for milkshake for the week.</figcaption>
</figure>

<figure>
  
<img src="/assets/images/FoodByMe/ac_breakfast.jpg" alt="ac" />

  <figcaption>Mint Chutney and Roasted Sweet Potatoes.</figcaption>
</figure>

<figure>
  
<img src="/assets/images/FoodByMe/an_kulcha_chanamasala.jpg" alt="an" />

  <figcaption>Kulchas and Chana Masala.</figcaption>
</figure>

<figure>
  
<img src="/assets/images/FoodByMe/ai_pizza.jpg" alt="ai" />

  <figcaption>First pizza and after multiple attempts.</figcaption>
</figure>

<figure>
  
<img src="/assets/images/FoodByMe/ae_mangoes.jpg" alt="ae" />

  <figcaption>Mango Haul. My flatmate's family bought this for us. I miss mango season in India.</figcaption>
</figure>

<figure>
  
<img src="/assets/images/FoodByMe/ak_three-by-three-1.jpg" alt="ak" />

  <figcaption>Mashed Potatoes, Brocolli-Corn-Peas Curry, and Rice.</figcaption>
</figure>

<figure>
  
<img src="/assets/images/FoodByMe/al_dumpling_prep.jpg" alt="al" />

  <figcaption>Dumplings on the way.</figcaption>
</figure>]]></content><author><name>Vijay Dubey</name></author><category term="playground" /><summary type="html"><![CDATA[The weekdays are about cooking healthy but quick recipes. On weekends, I choose recipes that take longer time to cook. Either ways I want to showcase some of the stuff I was too happy to make and eat.]]></summary></entry><entry><title type="html">Graph Neural Networks for Soft-Body Contact Mechanics</title><link href="https://inkandvijay.com/publications/publications-sb3c2025/" rel="alternate" type="text/html" title="Graph Neural Networks for Soft-Body Contact Mechanics" /><published>2025-06-24T13:30:00-05:00</published><updated>2025-06-24T13:30:00-05:00</updated><id>https://inkandvijay.com/publications/publications-sb3c2025</id><content type="html" xml:base="https://inkandvijay.com/publications/publications-sb3c2025/"><![CDATA[<!-- **DOI:** [https://doi.org/10.1016/j.apacoust.2021.108121](https://doi.org/10.1016/j.apacoust.2021.108121) -->

<p><strong>Authors:</strong> <a href="https://scholar.google.com/citations?user=dP77ayMAAAAJ&amp;hl=en&amp;oi=ao">Vijay Dubey</a>, <a href="https://scholar.google.com/citations?user=48zQVCAAAAAJ&amp;hl=en&amp;oi=ao">Collin E. Haese</a>, <a href="https://scholar.google.com/citations?user=pkCB920AAAAJ&amp;hl=en&amp;oi=ao">Osman Gültekin</a>, <a href="https://scholar.google.com/citations?user=vbdDJ6cAAAAJ&amp;hl=en&amp;oi=ao">Jan Fuhg</a>, <a href="https://scholar.google.com/citations?user=RHSOSbEAAAAJ&amp;hl=en&amp;oi=ao">Manuel K. Rausch</a>.</p>

<h1 id="how-to-cite">How to Cite</h1>

<div class="language-bib highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="nc">@inproceedings</span><span class="p">{</span><span class="nl">dubey_graph_2025_sb3c</span><span class="p">,</span>
	<span class="na">address</span> <span class="p">=</span> <span class="s">{Austin TX USA}</span><span class="p">,</span>
	<span class="na">title</span> <span class="p">=</span> <span class="s">{Graph Neural Networks for Soft-Body Contact Mechanics}</span><span class="p">,</span>
	<span class="na">booktitle</span> <span class="p">=</span> <span class="s">{Proceedings of the ASME Summer Bioengineering Conference 2025}</span><span class="p">,</span>
	<span class="na">author</span> <span class="p">=</span> <span class="s">{Dubey, Vijay and Haese, Collin E. and Gültekin, Osman and Fuhg, Jan and Rausch, Manuel K.}</span><span class="p">,</span>
	<span class="na">year</span> <span class="p">=</span> <span class="s">{2024}</span><span class="p">,</span>
<span class="p">}</span>
</code></pre></div></div>]]></content><author><name>Vijay Dubey</name></author><category term="publications" /><category term="Poster" /><category term="FirstAuthor" /><category term="Conference" /><summary type="html"><![CDATA[]]></summary></entry><entry><title type="html">Publications Sb3c2025.md:zone</title><link href="https://inkandvijay.com/publications-sb3c2025.md-Zone/" rel="alternate" type="text/html" title="Publications Sb3c2025.md:zone" /><published>2025-06-24T00:00:00-05:00</published><updated>2025-06-24T00:00:00-05:00</updated><id>https://inkandvijay.com/publications-sb3c2025.md:Zone</id><content type="html" xml:base="https://inkandvijay.com/publications-sb3c2025.md-Zone/"><![CDATA[[ZoneTransfer]
ZoneId=3]]></content><author><name>Vijay Dubey</name></author><summary type="html"><![CDATA[[ZoneTransfer] ZoneId=3]]></summary></entry></feed>